Recent work has show that evolution can occur over short time scale (as little as one generation). Rapid adaptation is espeically important in the context of climate change and novel environments. Many organisms have recently shifted their biogeographic range as a response to the changing climate, including my study species, Kellet's whelks. Kellet's whelk expanded its range poleward past a natural biogeographic break at Point Conception ~40 years ago, allowing us to ask questions about how they've rapidly evolved to novel environments in their expanded range.
Our work is nicely summed up by Flanagan et al (2025):
"Lee et al. (2024) studied Kellet's whelk, whose range is expanding along the North American Pacific coast. Using transcriptomic data from offspring collected from historical and expanded populations, they discovered several putatively adaptive loci associated with cold tolerance and metabolic stress, suggesting that genetic adaptation may play a critical role in helping marine species withstand colder temperatures as the whelks shift their ranges poleward."
It is difficult to detect statistically significant population structure in open coast marine species due to the high gene flow nature of their populations.
In Kellet's whelk, global FST = 0.0009 across 9 microsatellite loci (Selkoe et al. 2010). Differentiation in putatively adaptive loci (i.e., loci under selection) may occur in the face of high gene flow even if populations appear homogenous at neutral loc. For example, loci associated with temperature tolerance presents different patterns of population differentiation than neutral loci and may suggest additional population structures that neutral loci cannot detect.
Using transcriptome-wide SNPs and SNPs found on differentially expressed genes, we uncovered previously unidentified population structure in Kellet's whelks (Lee et al 2024).
The analysis of large datasets has become increasingly common. Due to the limitations imposed by working with large datasets in biology and related fields, data are often filtered to identify informative subsets of data to reduce the costs of future analyses and expedite downstream analysis.
When conducting large-scale grouping of individuals to populations or geographic locations, for example, researchers often choose (ascertain) subsets of genetic loci that are most differentiated among populations and thus the most informative for assigning individuals to a population of origin. Researchers can choose informative or candidate loci using many different criteria. Unfortunately, choosing informative loci from a distribution (e.g., of FST values) can cause high-grading bias, an overestimation of power in a subset of loci due to model overfitting. We demonstrate this problem and offer some solutions in our 2025 paper in Molecular Ecology Resources.
How are marine populations connected to each other in space? Across a species’ biogeographic range, from which local populations do juveniles come from?
Identifying patterns of connectivity among populations is fundamental to understanding the ecology and evolution of marine species, and critical for effective stock management and conservation. Yet, it is difficult to quantify connectivity in marine organisms because they are difficult to directly observe in their environments. Furthermore, miniscule larvae and large population sizes make traditional measures of population connectivity difficult to implement in marine systems. To date, there is no empirical quantification of population connectivity across an open-coast marine species’ entire biogeographic range. Thus, a genetic approach may be beneficial. Using a novel set of GT-Seq loci developed on differentilaly expressed genes between the expanded and historial ranges of Kellet's whelks, I quantify population connectivity across Kellet’s whelks using population assignment tests.
Genetic Research Program, California Department of Fish and Wildlife
As a Scientific Aid (genetic technician) in the Genetic Research Program of the CDFW Wildlife Investigations Lab, I used various conservation genetic and genomic techniques to protect and conserve California native species. I focused largely on creating libraries using Double Digest RADseq (ddRAD) to study Tule elk and Rocky Mountain elk populations.
I conducted plankton sampling using field and robotics techniques, then identified plankton using microscopy and genetics. I also coordinated and managed the California Collaborative Fisheries Research Project. I worked with scientists, commercial fishermen, and recreational anglers to monitor California’s Marine Protected Areas and determined their efficacy at preserving groundfish species from fishing pressure.
For my undergraduate thesis at the MECU, I examined genetic differences of island spotted skunks from Santa Cruz and Santa Rosa Islands, as part of a larger study on the timing of divergence between skunks of the Channel Islands and mainland California. We found that island spotted skunks share similar time of divergence as the protected island foxes. Check out our paper on the cover of the Journal of Mammalogy!